WebOct 8, 2016 · Plant material. The panel for GWAS consisted of 175 upland rice (O. sativa ssp. japonica) accessions from the Embrapa Rice Core Collection (Abadie et al. 2005), and included 83 Brazilian landraces, 47 improved varieties from Brazil and 45 improved varieties from other countries (Supplemental Table 1).Phenotyping. Two experiments were … WebGene/region search results: 7 Study Datasets reported containing markers in gene or region MAF (no 5′ and no 3′ flanks) with -log p ≥ 0. View and refine results.. Export as. --choose …
PLINK: Whole genome data analysis toolset - Harvard University
WebBefore frequency and genotyping pruning, there are 83534 SNPs Applying filters (SNP-major mode) 89 founders and 0 non-founders found 0 SNPs failed missingness test ( GENO > 1 ) 0 SNPs failed frequency test ( MAF 0 ) After frequency and genotyping pruning, there are 83534 SNPs Writing pedigree information to [ hapmap1.fam ] Writing map (extended ... WebDec 11, 2014 · GENEVA is an NIH-funded consortium of sixteen genome-wide association studies (GWAS) and this guide served as the basis to begin the eMERGE Phase-II imputation process. ... Subsequently, the MAF threshold can be used as a filter for analysis. We have also illustrated MAF as a filter after using a SNP call rate filter of 99%. As … how to shortcut screenshot
National Center for Biotechnology Information
WebApr 7, 2024 · The structure of the maize kernels plays a critical role in determining maize yield and quality, and high-throughput, non-destructive microscope phenotypic characteristics acquisition and analysis are of great importance. In this study, Micro-CT technology was used to obtain images of maize kernels. An automatic CT image analysis … WebNational Center for Biotechnology Information WebSep 16, 2024 · Imputation of canine genotype array data using 365 whole-genome sequences improves power of genome-wide association studies. Jessica J. Hayward , Roles Conceptualization, Investigation, Software, Visualization, Writing – original ... , both in exon 5, but only one passed our 5% MAF filter. Similarly, the HMGA2 causal variant … nottingham constructions